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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4625Predicted phosphoribosyltransferase ComF family. (235 aa)    
Predicted Functional Partners:
dprA
DNA processing protein DprA.
 
 
 0.917
SO_2803
DNA internalization-related competance protein ComEC/Rec2 family.
 
  
 0.892
yifB
ATP-dependent serine peptidase S16 family YifB.
 
  
 0.874
yicR
Protein of unknown function DUF2466 YicR; Belongs to the UPF0758 family.
 
    0.763
yfjY
Protein of unknown function DUF2466 YfjY; Belongs to the UPF0758 family.
 
    0.749
SO_0299
Predicted endonuclease distantly related to archael Holliday junction resolvase TIGR00252 family; Belongs to the UPF0102 family.
 
    0.708
arsP
Permease of unknown function DUF318 ArsP.
   
    0.701
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.643
tyrA
Bifunctional chorismate mutase T/prephenate dehydrogenase TyrA.
  
  
 0.629
SO_2119
Protein phosphatase with response regulator reciever modulation.
   
  
 0.624
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.