Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_4625Predicted phosphoribosyltransferase ComF family. (235 aa)    
Predicted Functional Partners:
dprA
DNA processing protein DprA.
 
 
 0.918
SO_2803
DNA internalization-related competance protein ComEC/Rec2 family.
 
  
 0.909
yifB
ATP-dependent serine peptidase S16 family YifB.
 
  
 0.900
SO_0299
Predicted endonuclease distantly related to archael Holliday junction resolvase TIGR00252 family; Belongs to the UPF0102 family.
 
    0.717
arsP
Permease of unknown function DUF318 ArsP.
   
    0.694
yicR
Protein of unknown function DUF2466 YicR; Belongs to the UPF0758 family.
 
    0.691
yfjY
Protein of unknown function DUF2466 YfjY; Belongs to the UPF0758 family.
 
    0.678
bioH
Biotin biosynthesis carboxylesterase BioH; The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters.
     
 0.678
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.672
tyrA
Bifunctional chorismate mutase T/prephenate dehydrogenase TyrA.
  
    0.620
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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