STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4628Membrane sulfatase HI1246 family. (660 aa)    
Predicted Functional Partners:
SO_4680
CDP-glycerol glycerophosphotransferase family protein.
     
 0.828
SO_2290
Rhodanese domain protein UPF0176 family; Belongs to the UPF0176 family.
     
 0.827
aaiD
Acyl-homoserine lactone acylase AaiD.
     
 0.808
wbqC
Putative glycine transferase in O-antigen biosynthesis cluster WbqC.
      
 0.745
rluD
23S rRNA pseudouridine1911/1915/1917 synthase RluD; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
      
 0.731
mxdA
Diguanylate cyclase-like protein MxdA.
      
 0.578
SO_0306
Outer membrane protein COG4775 family.
 
     0.506
fliP
Flagellar export protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
      
 0.505
SO_3975
Membrane protein PAP2 superfamily.
 
     0.476
cheR
Chemotaxis signal transduction system MCP methyltransferase CheR; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
      
 0.457
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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