Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yhiRExogenous DNA processing protein YhiR; Specifically methylates the adenine in position 2030 of 23S rRNA. (281 aa)    
Predicted Functional Partners:
rsmJ
16S rRNA (guanine1516-G2)-methyltransferase RsmJ; Specifically methylates the guanosine in position 1516 of 16S rRNA.
  
  
 0.587
rlmG
23S rRNA (guanine1835-N2)-methyltransferase RlmG; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.
      
 0.523
fklB-3
Peptidyl-prolyl cis-trans isomerase FklB.
   
  
 0.504
fklB-4
Peptidyl-prolyl cis-trans isomerase FklB.
   
  
 0.503
rsmA
16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase RsmA; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
     
 0.497
rlmF
23S rRNA (adenine1618-N6)-methyltransferase RlmF; Specifically methylates the adenine in position 1618 of 23S rRNA.
      
 0.490
ppiC
Peptidyl-prolyl cis-trans isomerase PpiC.
  
  
 0.484
ppiC-2
Peptidyl-prolyl cis-trans isomerase PpiC.
  
  
 0.484
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
      
 0.480
fklB
Peptidyl-prolyl cis-trans isomerase FklB.
      
 0.479
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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