STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4660Glycoside hydrolase family 23. (239 aa)    
Predicted Functional Partners:
SO_2564
Membrane-bound lytic peptidoglycan transglycosylase D.
  
  
 0.918
SO_1994
Membrane-bound lytic transglycosylase MltB_2 family.
  
  
 0.862
mltD
Membrane bound lytic murein transglycosylase MltD.
 
  
 0.830
mltB
Lytic murein transglycosylase B MltB.
      
 0.812
SO_4661
Membrane protein of unknown function DUF3137.
   
   0.792
motB
Stator-force generator of H+ coupled flagellar motor MotB.
 
  
 0.673
fliI
Flagellar protein export ATPase FliI.
  
  
 0.636
fliE
Flagellar basal-body component FliE.
  
  
 0.631
SO_4662
lemA protein.
  
    0.630
fliD
Flagellar filament capping protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.626
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.