STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4680CDP-glycerol glycerophosphotransferase family protein. (358 aa)    
Predicted Functional Partners:
yebR
Free methionine-R-sulfoxide reductase YebR.
      
 0.910
SO_4628
Membrane sulfatase HI1246 family.
     
 0.828
SO_2290
Rhodanese domain protein UPF0176 family; Belongs to the UPF0176 family.
      
 0.824
aaiD
Acyl-homoserine lactone acylase AaiD.
      
 0.803
yfiH
Uncharacterized protein YfiH; Belongs to the multicopper oxidase YfiH/RL5 family.
      
 0.788
wbqC
Putative glycine transferase in O-antigen biosynthesis cluster WbqC.
     
 0.751
wabH
Glycosyl transferase family 4 WabH.
  
  
 0.744
flgK
Flagellar hook-filament junction protein FlgK; Belongs to the flagella basal body rod proteins family.
  
    0.618
flgL
Flagellar hook-associated protein FlgL.
  
  
 0.609
waaC
ADP-heptose-LPS heptosyltransferase WaaC.
  
    0.604
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.