Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_4685Outer membrane protein in capsule/EPS biosynthesis locus. (490 aa)    
Predicted Functional Partners:
wzd
Uncharacterized protein.
      
 0.882
SO_3385
Transcriptional activator of singlet oxygen protection.
      
 0.831
mshJ
MSHA biogenesis protein MshJ.
      
 0.810
wbnJ
O-antigen biosynthesis acetyltransferase WbnJ.
      
 0.809
SO_2183
LD-transpeptidase ErfK/YbiS/YcfS/YnhG family.
      
 0.807
SO_0625
Periplasmic cyctochrome c oxidase regulatory protein.
      
 0.805
wbpQ
Asparagine synthase glutamine-hydrolyzing WbpQ.
  
  
 0.804
wzz
Polysaccharide chain length determinant Wzz.
 
  
 0.795
SO_3183
Perosamine synthetase-related protein; Belongs to the DegT/DnrJ/EryC1 family.
      
 0.792
wza
Outer membrane polysaccharide export channel protein Wza.
 
  
 0.760
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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