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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4688Glycosyl transferase family 2. (243 aa)    
Predicted Functional Partners:
SO_4690
Glycosyl transferase family 83.
 
  
 0.968
SO_4689
Membrane protein COG0398 family.
 
   
 0.913
SO_0392
Predicted lipoprotein.
   
  
 0.740
SO_3484
HAE1 family efflux pump permease component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
    
 
 0.738
vmeB
Proton-coupled multidrug efflux pump permease component VmeB.
    
 
 0.738
wcvA
UDP-glucuronate 4-epimerase WcvA.
 
 
 0.682
wcvB
UDP-glucose dehydrogenase WcvB.
  
  
 0.673
SO_3185
Enzyme for biosynthesis of dTDP-Qui4N; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.596
SO_1882
HAE1 family efflux pump permease component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
    
 
 0.586
cpxA
Periplasmic stress-responsive two component signal transduction system histidine kinase CpxA.
    
 
 0.524
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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