Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SO_4690Glycosyl transferase family 83. (574 aa)    
Predicted Functional Partners:
SO_4688
Glycosyl transferase family 2.
 
  
 0.978
SO_4689
Membrane protein COG0398 family.
    0.881
wcvB
UDP-glucose dehydrogenase WcvB.
  
  
 0.635
SO_1712
Transcriptional regulator.
  
     0.521
fmt
methionyl-tRNA formyltransferase Fmt; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.502
wcvA
UDP-glucuronate 4-epimerase WcvA.
 
  
 0.464
SO_4151
Polysaccharide deacetylase.
  
  
 0.424
SO_4616
Carbohydrate esterase family 4.
  
  
 0.424
creD
Membrane protein CreD.
   
    0.423
SO_2048
Sulfatase with domain of unknown function DUF1705.
  
  
 0.400
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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