STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
torFTMAO reductase system outer membrane porin TorF. (248 aa)    
Predicted Functional Partners:
SO_0547
Putative outer membrane protein TIGR02001 family.
  
     0.769
SO_4147
Type I secretion system ATPase and inner membrane subunit HlyB family.
  
     0.627
nosL
ABC-type copper uptake system periplasmic chaperone component NosL.
  
   
 0.616
torS
Histidine kinase; TMAO-responsive two component signal transduction system hybrid histidine kinase/response regulator TorS.
  
   
 0.592
SO_1482
TonB-dependent receptor.
  
    0.574
SO_0055
Tetratricopeptide repeat-containing protein.
  
    0.573
nosY
ABC-type copper transport system permease component NosY.
  
   
 0.558
sirG
Cytochrome c maturation system haem lyase subunit SirG.
   
  
 0.512
sirI
Cytochrome c maturation system peptidyl-prolyl cis-trans isomerase SirI.
   
  
 0.508
SO_2931
Cytochrome c lipoprotein.
   
  
 0.501
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.