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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4704Uncharacterized protein. (262 aa)    
Predicted Functional Partners:
pilU
Pilus retraction ATPase PilU.
      
 0.782
SO_3174
O-antigen biosynthesis glycosyl transferase family 4.
      
 0.735
SO_3177
Formyltransferase domain protein.
      
 0.732
wbfY
Polysaccharide biosynthesis protein epimerase/dehydratase-like WbfY.
      
 0.730
gspC
T2aSS secretion system protein GspC.
      
 0.575
SO_1588
Uncharacterized protein.
   
  
 0.459
SO_3772
SH3 domain protein.
   
    0.429
SO_0148
Uncharacterized protein.
   
    0.418
zapA
Cell division protein interacting with FtsZ ZapA; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
   
    0.418
SO_3902
Protein of unknown function DUF1249.
   
    0.418
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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