STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4705Transcriptional repressor Xre family. (510 aa)    
Predicted Functional Partners:
malR
Transcriptional repressor of maltodextrose utilization MalR.
      
 0.970
sdaR
Transcriptional repressor of glycerate utilization SdaR.
      
 0.861
puuR
Putrescine degradation gene regulator PuuR.
  
  
 0.828
SO_4706
Malate synthase domain protein.
 
   
 0.759
wzz
Polysaccharide chain length determinant Wzz.
  
     0.707
SO_1699
Transmembrane transcriptional regulator.
  
    0.664
SO_0735
Predicted inner membrane protein.
  
  
 0.608
wza
Outer membrane polysaccharide export channel protein Wza.
  
    0.553
recA
Recombinase A RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.551
lys
Mu phage endolysin Lys.
  
     0.540
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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