Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4710Paraquat-inducible membrane protein PqiA family. (211 aa)    
Predicted Functional Partners:
SO_1821
Outer membrane porin.
  
     0.657
SO_0366
P-loop containing nucleotide triphosphate hydrolase.
  
    0.525
SO_4711
Cyclic di-GMP hydrolase.
       0.520
lipB
Lipoyl(octanoyl) transferase LipB; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
   
    0.506
SO_0551
Uncharacterized protein.
  
    0.462
SO_2606
Multivalent adhesion molecule 7.
  
 
 0.451
SO_4641
Toxin-antitoxin system toxin RelE family.
  
    0.440
SO_4709
Uncharacterized protein.
       0.439
yceI
Base-induced periplasmic protein YceI; Belongs to the UPF0312 family.
  
     0.426
SO_3793
Cupin 2 conserved barrel domain-containing protein.
   
    0.421
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.