STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4711Cyclic di-GMP hydrolase. (394 aa)    
Predicted Functional Partners:
SO_0796
Diguanylate cyclase.
 
   0.831
SO_1695
Diguanylate cyclase with PAS sensory domain.
 
   0.797
SO_0569
Diguanylate cyclase with PAS sensory domain.
 
 
 0.736
SO_4407
Diguanylate cyclase.
 
 
   0.700
SO_0928
Diguanylate cyclase.
 
 
   0.695
SO_1055
Diguanylate cyclase with PAS and GAF sensory domains.
 
 0.676
SO_3556
Diguanylate cyclase with GAF sensory domain.
 
 
 0.584
SO_1646
Diguanylate cyclase.
 
   0.575
SO_2049
Diguanylate cyclase.
 
 
   0.571
SO_2498
Bifunctional diguanylate cyclase/phosphodiesterase with GAF and PAS sensory domains.
 
 
 0.523
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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