STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4718Tungstate-responsive two component Sigma54-dependent signal transduction system response regulator Fis family. (460 aa)    
Predicted Functional Partners:
SO_4717
Tungstate-responsive two component signal transduction system histidine kinase.
 
 
 0.936
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.798
flhG
Flagellar polar localization control system FlhF inhibitory ATPase FlhG.
  
 
 0.775
ttrS
Thiosulfate/tetrathionate-responsive two component signal transduction system histidine kinase TtrS.
 
 
 0.707
SO_3627
Transcriptional repressor of flavocytochrome c TetR family.
   
  
 0.706
SO_0490
Transmembrane transcriptional regulator CadC family.
   
  
 0.693
glnL
Nitrogen-responsive two component signal transduction system histidine kinase with PAS sensory domain GlnL.
 
 0.691
SO_3874
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.669
nrdD
Anaerobic ribonucleoside-triphosphate reductase NrdD.
      
 0.661
SO_3297
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
   
 0.654
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.