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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4727Methyltransferase type 11 associated with YihI. (212 aa)    
Predicted Functional Partners:
SO_4729
Protein of unknown function DUF2489.
 
    0.657
yihI
GAP-like protein YihI; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
    0.603
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
  
 
 0.566
uvrY
Two component signal transduction system response regulator UvrY.
      
 0.485
SO_3458
Protein of unknown function DUF416.
      
 0.459
SO_4193
Esterase/lipase/thioesterase family protein.
   
  
 0.458
SO_1617
Protein of unknown function DUF3301.
   
  
 0.457
tnpA-4
ISSod4 transposase TnpA_ISSod4; Required for the transposition of the insertion element.
      
 0.455
tnpA-38
ISSod4 transposase TnpA_ISSod4.
      
 0.455
rsmC
16S rRNA (guanine1207-N2)-methyltransferase RsmC; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family.
   
  
 0.454
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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