STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_4729Protein of unknown function DUF2489. (155 aa)    
Predicted Functional Partners:
yihI
GAP-like protein YihI; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
 
    0.794
SO_2872
Membrane protein of unknown function DUF2069.
  
    0.698
SO_1110
Protein of unknown function DUF539.
  
     0.694
SO_2557
TIGR03503 family protein.
  
     0.682
SO_4727
Methyltransferase type 11 associated with YihI.
 
    0.675
SO_1618
Protein of unknown function DUF3549.
  
    0.616
ppiC
Peptidyl-prolyl cis-trans isomerase PpiC.
   
    0.602
SO_1991
Protein of unknown function DUF2570.
  
     0.551
SO_3905
Predicted outer membrane protein.
  
     0.551
hemN
Coproporphyrinogen III oxidase oxygen-independent HemN; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.551
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.