STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_4732Lipoprotein of unknown function DUF885. (601 aa)    
Predicted Functional Partners:
SO_0017
Bifunctional TolB-family protein/amidohydrolase.
 
    0.583
SO_2198
Peptidase M28 family.
  
    0.579
SO_1822
TonB-dependent receptor.
  
    0.571
SO_2766
Peptidase M28A family.
  
    0.565
SO_0578
Periplasmic metalloprotease.
  
     0.559
SO_0321
Putative periplasmic protein of unknown function.
  
    0.539
lypA
Lysophospholipase L2 LypA.
       0.524
SO_2907
ArgR-regulated TonB-dependent receptor.
  
     0.517
SO_2427
ArgR-regulated TonB-dependent receptor.
  
     0.507
add
Adenosine deaminase Add; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.
  
    0.500
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.