STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001189955_00901Unannotated protein. (120 aa)    
Predicted Functional Partners:
GCA_001189955_00157
Unannotated protein.
 
 0.998
GCA_001189955_03452
Unannotated protein.
 
  
 0.978
GCA_001189955_04547
Unannotated protein.
   
 
 0.946
GCA_001189955_00412
Unannotated protein.
  
  
 0.752
GCA_001189955_03069
Unannotated protein.
    
 0.734
GCA_001189955_01759
Unannotated protein.
     
 0.731
GCA_001189955_00791
Unannotated protein.
 
  
 0.722
GCA_001189955_03074
Unannotated protein.
    
  0.701
GCA_001189955_04366
Unannotated protein.
    
 0.701
GCA_001189955_01812
Unannotated protein.
     
 0.699
Your Current Organism:
Herbaspirillum chlorophenolicum
NCBI taxonomy Id: 211589
Other names: H. chlorophenolicum, Herbaspirillum chlorophenicus, Herbaspirillum chlorophenolicum Im et al. 2004, Herbaspirillum sp. CPW301, IAM 15024, JCM 21487, KCTC 12096, NBRC 102525, strain CPW301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.