STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001189955_03652Unannotated protein. (336 aa)    
Predicted Functional Partners:
GCA_001189955_02157
Unannotated protein.
   
 
 0.832
GCA_001189955_03653
Unannotated protein.
 
    
0.651
GCA_001189955_00554
Unannotated protein.
   
 
 0.616
GCA_001189955_02535
Unannotated protein.
   
 
 0.616
GCA_001189955_01179
Unannotated protein.
 
 
 0.504
GCA_001189955_03650
Unannotated protein.
       0.496
GCA_001189955_03651
Unannotated protein.
       0.496
GCA_001189955_01416
Unannotated protein.
 
     0.456
GCA_001189955_01621
Unannotated protein.
   
   0.454
GCA_001189955_03741
Unannotated protein.
   
   0.454
Your Current Organism:
Herbaspirillum chlorophenolicum
NCBI taxonomy Id: 211589
Other names: H. chlorophenolicum, Herbaspirillum chlorophenicus, Herbaspirillum chlorophenolicum Im et al. 2004, Herbaspirillum sp. CPW301, IAM 15024, JCM 21487, KCTC 12096, NBRC 102525, strain CPW301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.