HDGFL3 protein (Accipiter nisus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

HDGFL3

HDGF like 3. (214 aa)

Predicted Functional Partners:

SRRD

0.694

SNN

0.648

ENSANIP00000016377

0.647

ENSANIP00000022218

0.647

SRBD1

0.606

ENSANIP00000025487

0.604

CDK13

0.570

CDK12

0.570

MACROH2A2

0.559

ENSANIP00000006374

0.555

Your Current Organism:

Accipiter nisus

NCBI taxonomy Id: 211598
Other names: A. nisus, Eurasian sparrowhawk

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK12	CDK13	ENSANIP00000023158	ENSANIP00000016062	Cyclin dependent kinase 12.	Cyclin dependent kinase 13.	0.540
CDK12	HDGFL3	ENSANIP00000023158	ENSANIP00000001075	Cyclin dependent kinase 12.	HDGF like 3.	0.570
CDK13	CDK12	ENSANIP00000016062	ENSANIP00000023158	Cyclin dependent kinase 13.	Cyclin dependent kinase 12.	0.540
CDK13	HDGFL3	ENSANIP00000016062	ENSANIP00000001075	Cyclin dependent kinase 13.	HDGF like 3.	0.570
ENSANIP00000006374	HDGFL3	ENSANIP00000006374	ENSANIP00000001075	annotation not available	HDGF like 3.	0.555
ENSANIP00000006374	SRRD	ENSANIP00000006374	ENSANIP00000007844	annotation not available	SRR1 domain containing.	0.554
ENSANIP00000016377	ENSANIP00000022218	ENSANIP00000016377	ENSANIP00000022218	annotation not available	annotation not available	0.900
ENSANIP00000016377	ENSANIP00000025487	ENSANIP00000016377	ENSANIP00000025487	annotation not available	annotation not available	0.456
ENSANIP00000016377	HDGFL3	ENSANIP00000016377	ENSANIP00000001075	annotation not available	HDGF like 3.	0.647
ENSANIP00000016377	SRBD1	ENSANIP00000016377	ENSANIP00000011941	annotation not available	S1 RNA binding domain 1.	0.480
ENSANIP00000022218	ENSANIP00000016377	ENSANIP00000022218	ENSANIP00000016377	annotation not available	annotation not available	0.900
ENSANIP00000022218	ENSANIP00000025487	ENSANIP00000022218	ENSANIP00000025487	annotation not available	annotation not available	0.456
ENSANIP00000022218	HDGFL3	ENSANIP00000022218	ENSANIP00000001075	annotation not available	HDGF like 3.	0.647
ENSANIP00000022218	SRBD1	ENSANIP00000022218	ENSANIP00000011941	annotation not available	S1 RNA binding domain 1.	0.480
ENSANIP00000025487	ENSANIP00000016377	ENSANIP00000025487	ENSANIP00000016377	annotation not available	annotation not available	0.456
ENSANIP00000025487	ENSANIP00000022218	ENSANIP00000025487	ENSANIP00000022218	annotation not available	annotation not available	0.456
ENSANIP00000025487	HDGFL3	ENSANIP00000025487	ENSANIP00000001075	annotation not available	HDGF like 3.	0.604
HDGFL3	CDK12	ENSANIP00000001075	ENSANIP00000023158	HDGF like 3.	Cyclin dependent kinase 12.	0.570
HDGFL3	CDK13	ENSANIP00000001075	ENSANIP00000016062	HDGF like 3.	Cyclin dependent kinase 13.	0.570
HDGFL3	ENSANIP00000006374	ENSANIP00000001075	ENSANIP00000006374	HDGF like 3.	annotation not available	0.555