ARID5A protein (Accipiter nisus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ARID5A

AT-rich interaction domain 5A. (605 aa)

Predicted Functional Partners:

ENSANIP00000001008

0.658

ENSANIP00000013468

0.658

ENSANIP00000014878

0.658

ARID3B

0.657

RC3H1

0.639

ENSANIP00000019909

0.610

RBBP7

0.610

POLR3C

0.609

POLR3D

0.608

MIDN

0.602

Your Current Organism:

Accipiter nisus

NCBI taxonomy Id: 211598
Other names: A. nisus, Eurasian sparrowhawk

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID3B	ARID5A	ENSANIP00000010936	ENSANIP00000001903	AT-rich interaction domain 3B.	AT-rich interaction domain 5A.	0.657
ARID3B	ENSANIP00000019909	ENSANIP00000010936	ENSANIP00000019909	AT-rich interaction domain 3B.	annotation not available	0.586
ARID3B	RBBP7	ENSANIP00000010936	ENSANIP00000021858	AT-rich interaction domain 3B.	RB binding protein 7, chromatin remodeling factor.	0.586
ARID5A	ARID3B	ENSANIP00000001903	ENSANIP00000010936	AT-rich interaction domain 5A.	AT-rich interaction domain 3B.	0.657
ARID5A	ENSANIP00000001008	ENSANIP00000001903	ENSANIP00000001008	AT-rich interaction domain 5A.	annotation not available	0.658
ARID5A	ENSANIP00000013468	ENSANIP00000001903	ENSANIP00000013468	AT-rich interaction domain 5A.	annotation not available	0.658
ARID5A	ENSANIP00000014878	ENSANIP00000001903	ENSANIP00000014878	AT-rich interaction domain 5A.	annotation not available	0.658
ARID5A	ENSANIP00000019909	ENSANIP00000001903	ENSANIP00000019909	AT-rich interaction domain 5A.	annotation not available	0.610
ARID5A	MIDN	ENSANIP00000001903	ENSANIP00000009482	AT-rich interaction domain 5A.	Midnolin.	0.602
ARID5A	POLR3C	ENSANIP00000001903	ENSANIP00000008451	AT-rich interaction domain 5A.	RNA polymerase III subunit C.	0.609
ARID5A	POLR3D	ENSANIP00000001903	ENSANIP00000023051	AT-rich interaction domain 5A.	RNA polymerase III subunit D.	0.608
ARID5A	RBBP7	ENSANIP00000001903	ENSANIP00000021858	AT-rich interaction domain 5A.	RB binding protein 7, chromatin remodeling factor.	0.610
ARID5A	RC3H1	ENSANIP00000001903	ENSANIP00000026643	AT-rich interaction domain 5A.	Ring finger and CCCH-type domains 1.	0.639
ENSANIP00000001008	ARID5A	ENSANIP00000001008	ENSANIP00000001903	annotation not available	AT-rich interaction domain 5A.	0.658
ENSANIP00000001008	ENSANIP00000013468	ENSANIP00000001008	ENSANIP00000013468	annotation not available	annotation not available	0.900
ENSANIP00000013468	ARID5A	ENSANIP00000013468	ENSANIP00000001903	annotation not available	AT-rich interaction domain 5A.	0.658
ENSANIP00000013468	ENSANIP00000001008	ENSANIP00000013468	ENSANIP00000001008	annotation not available	annotation not available	0.900
ENSANIP00000014878	ARID5A	ENSANIP00000014878	ENSANIP00000001903	annotation not available	AT-rich interaction domain 5A.	0.658
ENSANIP00000019909	ARID3B	ENSANIP00000019909	ENSANIP00000010936	annotation not available	AT-rich interaction domain 3B.	0.586
ENSANIP00000019909	ARID5A	ENSANIP00000019909	ENSANIP00000001903	annotation not available	AT-rich interaction domain 5A.	0.610