LTF protein (Accipiter nisus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LTF

Lactotransferrin. (706 aa)

Predicted Functional Partners:

TFRC

0.973

ENSANIP00000019018

0.899

EPO

0.896

ENSANIP00000004958

0.883

MIS12

0.725

ENSANIP00000005006

0.683

ENSANIP00000004867

0.679

ENSANIP00000001999

0.675

CLUL1

0.672

ENSANIP00000019418

0.652

Your Current Organism:

Accipiter nisus

NCBI taxonomy Id: 211598
Other names: A. nisus, Eurasian sparrowhawk

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLUL1	ENSANIP00000019418	ENSANIP00000010129	ENSANIP00000019418	Clusterin like 1.	annotation not available	0.517
CLUL1	LTF	ENSANIP00000010129	ENSANIP00000001971	Clusterin like 1.	Lactotransferrin.	0.672
ENSANIP00000001999	LTF	ENSANIP00000001999	ENSANIP00000001971	annotation not available	Lactotransferrin.	0.675
ENSANIP00000004867	ENSANIP00000019018	ENSANIP00000004867	ENSANIP00000019018	annotation not available	annotation not available	0.497
ENSANIP00000004867	LTF	ENSANIP00000004867	ENSANIP00000001971	annotation not available	Lactotransferrin.	0.679
ENSANIP00000004958	ENSANIP00000019018	ENSANIP00000004958	ENSANIP00000019018	annotation not available	annotation not available	0.769
ENSANIP00000004958	LTF	ENSANIP00000004958	ENSANIP00000001971	annotation not available	Lactotransferrin.	0.883
ENSANIP00000005006	ENSANIP00000019018	ENSANIP00000005006	ENSANIP00000019018	annotation not available	annotation not available	0.521
ENSANIP00000005006	LTF	ENSANIP00000005006	ENSANIP00000001971	annotation not available	Lactotransferrin.	0.683
ENSANIP00000019018	ENSANIP00000004867	ENSANIP00000019018	ENSANIP00000004867	annotation not available	annotation not available	0.497
ENSANIP00000019018	ENSANIP00000004958	ENSANIP00000019018	ENSANIP00000004958	annotation not available	annotation not available	0.769
ENSANIP00000019018	ENSANIP00000005006	ENSANIP00000019018	ENSANIP00000005006	annotation not available	annotation not available	0.521
ENSANIP00000019018	ENSANIP00000019418	ENSANIP00000019018	ENSANIP00000019418	annotation not available	annotation not available	0.458
ENSANIP00000019018	LTF	ENSANIP00000019018	ENSANIP00000001971	annotation not available	Lactotransferrin.	0.899
ENSANIP00000019418	CLUL1	ENSANIP00000019418	ENSANIP00000010129	annotation not available	Clusterin like 1.	0.517
ENSANIP00000019418	ENSANIP00000019018	ENSANIP00000019418	ENSANIP00000019018	annotation not available	annotation not available	0.458
ENSANIP00000019418	LTF	ENSANIP00000019418	ENSANIP00000001971	annotation not available	Lactotransferrin.	0.652
EPO	LTF	ENSANIP00000026672	ENSANIP00000001971	Erythropoietin.	Lactotransferrin.	0.896
EPO	TFRC	ENSANIP00000026672	ENSANIP00000017852	Erythropoietin.	Transferrin receptor.	0.574
LTF	CLUL1	ENSANIP00000001971	ENSANIP00000010129	Lactotransferrin.	Clusterin like 1.	0.672