APH_0135 protein (Anaplasma phagocytophilum)

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Score

APH_0135

Cold shock protein, CSD family; Identified by match to protein family HMM PF00313. (89 aa)

Predicted Functional Partners:

rpsL

0.853

rpsQ

0.841

rplW

0.807

rplC

0.783

rpmC

0.783

rpsE

0.780

rplV

0.779

rplX

0.772

rplT

0.764

rpmA

0.763

Your Current Organism:

Anaplasma phagocytophilum

NCBI taxonomy Id: 212042
Other names: A. phagocytophilum str. HZ, Anaplasma phagocytophilum HZ, Anaplasma phagocytophilum str. HZ

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH_0135	rplC	APH_0135	APH_0280	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.783
APH_0135	rplT	APH_0135	APH_0060	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.764
APH_0135	rplV	APH_0135	APH_0285	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	0.779
APH_0135	rplW	APH_0135	APH_0282	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.807
APH_0135	rplX	APH_0135	APH_0291	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.772
APH_0135	rpmA	APH_0135	APH_0698	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.	0.763
APH_0135	rpmC	APH_0135	APH_0288	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein L29; Identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family.	0.783
APH_0135	rpsE	APH_0135	APH_0297	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.780
APH_0135	rpsL	APH_0135	APH_1035	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.853
APH_0135	rpsQ	APH_0135	APH_0289	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.841
rplC	APH_0135	APH_0280	APH_0135	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	0.783
rplC	rplT	APH_0280	APH_0060	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.992
rplC	rplV	APH_0280	APH_0285	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).	0.998
rplC	rplW	APH_0280	APH_0282	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.998
rplC	rplX	APH_0280	APH_0291	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.998
rplC	rpmA	APH_0280	APH_0698	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.	0.991
rplC	rpmC	APH_0280	APH_0288	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L29; Identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family.	0.997
rplC	rpsE	APH_0280	APH_0297	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.996
rplC	rpsL	APH_0280	APH_1035	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.992
rplC	rpsQ	APH_0280	APH_0289	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.997