APH_0135 protein (Anaplasma phagocytophilum)

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Score

APH_0135

Cold shock protein, CSD family; Identified by match to protein family HMM PF00313. (89 aa)

Predicted Functional Partners:

rpoZ

0.882

rpoB

0.875

rpoA

0.848

infA

0.761

ntrY

0.716

rpsE

0.706

rpsL

0.705

rpsQ

0.702

rplT

0.685

APH_0137

0.684

Your Current Organism:

Anaplasma phagocytophilum

NCBI taxonomy Id: 212042
Other names: A. phagocytophilum str. HZ, Anaplasma phagocytophilum HZ, Anaplasma phagocytophilum str. HZ

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH_0135	APH_0137	APH_0135	APH_0137	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Putative ribonuclease D; Identified by similarity to SP:P09155; match to protein family HMM PF01612.	0.684
APH_0135	infA	APH_0135	APH_0395	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.761
APH_0135	ntrY	APH_0135	APH_0136	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Nitrogen regulation protein/Sensor Histidine Kinase NtrY; Name change according to the cited literature. PMID: 16882029.	0.716
APH_0135	rplT	APH_0135	APH_0060	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.685
APH_0135	rpoA	APH_0135	APH_0303	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.848
APH_0135	rpoB	APH_0135	APH_1024	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.875
APH_0135	rpoZ	APH_0135	APH_0514	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.882
APH_0135	rpsE	APH_0135	APH_0297	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.706
APH_0135	rpsL	APH_0135	APH_1035	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.705
APH_0135	rpsQ	APH_0135	APH_0289	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.702
APH_0137	APH_0135	APH_0137	APH_0135	Putative ribonuclease D; Identified by similarity to SP:P09155; match to protein family HMM PF01612.	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	0.684
APH_0137	ntrY	APH_0137	APH_0136	Putative ribonuclease D; Identified by similarity to SP:P09155; match to protein family HMM PF01612.	Nitrogen regulation protein/Sensor Histidine Kinase NtrY; Name change according to the cited literature. PMID: 16882029.	0.792
APH_0137	rpsE	APH_0137	APH_0297	Putative ribonuclease D; Identified by similarity to SP:P09155; match to protein family HMM PF01612.	Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.812
APH_0137	rpsL	APH_0137	APH_1035	Putative ribonuclease D; Identified by similarity to SP:P09155; match to protein family HMM PF01612.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.744
APH_0137	rpsQ	APH_0137	APH_0289	Putative ribonuclease D; Identified by similarity to SP:P09155; match to protein family HMM PF01612.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.782
infA	APH_0135	APH_0395	APH_0135	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.	0.761
infA	rplT	APH_0395	APH_0060	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.807
infA	rpoA	APH_0395	APH_0303	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.980
infA	rpoB	APH_0395	APH_1024	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.852
infA	rpoZ	APH_0395	APH_0514	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.584