Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
ntrYNitrogen regulation protein/Sensor Histidine Kinase NtrY; Name change according to the cited literature. PMID: 16882029. (700 aa)    
Predicted Functional Partners:
ntrX
Response Regulator NtrX, putative nitrogen assimilation regulatory protein; Name change according to the cited literature. PMID: 16882029.
 0.999
ctrA
DNA-binding response regulator CtrA; Name change according to the cited literature. PMID: 16882029.
   
 
 0.870
APH_0137
Putative ribonuclease D; Identified by similarity to SP:P09155; match to protein family HMM PF01612.
       0.792
APH_0135
Cold shock protein, CSD family; Identified by match to protein family HMM PF00313.
       0.714
cckA
Sensor histidine kinase/response regulator CckA; Name change according to the cited literature. PMID: 16882029.
 
 
0.698
pleD
Response regulator/GGDEF domain protein PleD; Name change according to the cited literature. PMID: 16882029.
     
 0.494
APH_1398
Putative dnaK suppressor protein; Identified by similarity to SP:P18274; match to protein family HMM PF01258.
 
     0.490
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
      
 0.407
nuoL
NADH dehydrogenase I, L subunit; Identified by similarity to SP:P29924; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974.
      
 0.403
Your Current Organism:
Anaplasma phagocytophilum
NCBI taxonomy Id: 212042
Other names: A. phagocytophilum str. HZ, Anaplasma phagocytophilum HZ, Anaplasma phagocytophilum str. HZ
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