APH_0347 protein (Anaplasma phagocytophilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

APH_0347

Identified by match to protein family HMM PF03364. (152 aa)

Predicted Functional Partners:

ctaA

0.741

ubiB

0.672

msp5

0.667

ctaG

0.523

APH_0246

0.459

APH_1297

0.459

APH_1171

0.439

dnaK

0.433

APH_0009

0.427

Your Current Organism:

Anaplasma phagocytophilum

NCBI taxonomy Id: 212042
Other names: A. phagocytophilum str. HZ, Anaplasma phagocytophilum HZ, Anaplasma phagocytophilum str. HZ

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH_0009	APH_0347	APH_0009	APH_0347	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; Identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988.	Identified by match to protein family HMM PF03364.	0.427
APH_0009	ubiB	APH_0009	APH_0984	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; Identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988.	2-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.	0.898
APH_0246	APH_0347	APH_0246	APH_0347	DNA / pantothenate metabolism flavoprotein family protein; Identified by similarity to SP:P24285; match to protein family HMM PF04127.	Identified by match to protein family HMM PF03364.	0.459
APH_0246	APH_1297	APH_0246	APH_1297	DNA / pantothenate metabolism flavoprotein family protein; Identified by similarity to SP:P24285; match to protein family HMM PF04127.	Flavoprotein; Identified by match to protein family HMM PF02441.	0.976
APH_0246	ctaA	APH_0246	APH_0123	DNA / pantothenate metabolism flavoprotein family protein; Identified by similarity to SP:P24285; match to protein family HMM PF04127.	Putative cytochrome oxidase assembly protein; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.	0.505
APH_0246	msp5	APH_0246	APH_1049	DNA / pantothenate metabolism flavoprotein family protein; Identified by similarity to SP:P24285; match to protein family HMM PF04127.	Major surface protein 5; Identified by similarity to PIR:A49213; match to protein family HMM PF02630.	0.503
APH_0347	APH_0009	APH_0347	APH_0009	Identified by match to protein family HMM PF03364.	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; Identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988.	0.427
APH_0347	APH_0246	APH_0347	APH_0246	Identified by match to protein family HMM PF03364.	DNA / pantothenate metabolism flavoprotein family protein; Identified by similarity to SP:P24285; match to protein family HMM PF04127.	0.459
APH_0347	APH_1171	APH_0347	APH_1171	Identified by match to protein family HMM PF03364.	Conserved hypothetical protein; Identified by similarity to GB:AAS14894.1.	0.439
APH_0347	APH_1297	APH_0347	APH_1297	Identified by match to protein family HMM PF03364.	Flavoprotein; Identified by match to protein family HMM PF02441.	0.459
APH_0347	ctaA	APH_0347	APH_0123	Identified by match to protein family HMM PF03364.	Putative cytochrome oxidase assembly protein; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.	0.741
APH_0347	ctaG	APH_0347	APH_1150	Identified by match to protein family HMM PF03364.	Cytochrome c oxidase assembly protein CtaG; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.	0.523
APH_0347	dnaK	APH_0347	APH_0346	Identified by match to protein family HMM PF03364.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.433
APH_0347	msp5	APH_0347	APH_1049	Identified by match to protein family HMM PF03364.	Major surface protein 5; Identified by similarity to PIR:A49213; match to protein family HMM PF02630.	0.667
APH_0347	ubiB	APH_0347	APH_0984	Identified by match to protein family HMM PF03364.	2-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.	0.672
APH_1171	APH_0347	APH_1171	APH_0347	Conserved hypothetical protein; Identified by similarity to GB:AAS14894.1.	Identified by match to protein family HMM PF03364.	0.439
APH_1171	ctaA	APH_1171	APH_0123	Conserved hypothetical protein; Identified by similarity to GB:AAS14894.1.	Putative cytochrome oxidase assembly protein; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.	0.980
APH_1171	ctaG	APH_1171	APH_1150	Conserved hypothetical protein; Identified by similarity to GB:AAS14894.1.	Cytochrome c oxidase assembly protein CtaG; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.	0.961
APH_1171	msp5	APH_1171	APH_1049	Conserved hypothetical protein; Identified by similarity to GB:AAS14894.1.	Major surface protein 5; Identified by similarity to PIR:A49213; match to protein family HMM PF02630.	0.728
APH_1297	APH_0246	APH_1297	APH_0246	Flavoprotein; Identified by match to protein family HMM PF02441.	DNA / pantothenate metabolism flavoprotein family protein; Identified by similarity to SP:P24285; match to protein family HMM PF04127.	0.976