APH_0513 protein (Anaplasma phagocytophilum)

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APH_0513

Smr domain protein; Identified by match to protein family HMM PF01713. (227 aa)

Predicted Functional Partners:

rpsA

0.725

rpsL

0.698

rpsG

0.696

rpsJ

0.685

rpsP

0.684

rplT

0.684

rpmI

0.684

rpsF

0.684

rplI

0.684

rplC

0.684

Your Current Organism:

Anaplasma phagocytophilum

NCBI taxonomy Id: 212042
Other names: A. phagocytophilum str. HZ, Anaplasma phagocytophilum HZ, Anaplasma phagocytophilum str. HZ

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APH_0513	rplC	APH_0513	APH_0280	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.684
APH_0513	rplI	APH_0513	APH_0153	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein L9; Binds to the 23S rRNA.	0.684
APH_0513	rplT	APH_0513	APH_0060	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.684
APH_0513	rpmI	APH_0513	APH_0061	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein L35; Identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family.	0.684
APH_0513	rpsA	APH_0513	APH_0273	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575.	0.725
APH_0513	rpsF	APH_0513	APH_0151	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.684
APH_0513	rpsG	APH_0513	APH_1034	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.696
APH_0513	rpsJ	APH_0513	APH_0279	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.685
APH_0513	rpsL	APH_0513	APH_1035	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.698
APH_0513	rpsP	APH_0513	APH_0054	Smr domain protein; Identified by match to protein family HMM PF01713.	Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.	0.684
rplC	APH_0513	APH_0280	APH_0513	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Smr domain protein; Identified by match to protein family HMM PF01713.	0.684
rplC	rplI	APH_0280	APH_0153	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L9; Binds to the 23S rRNA.	0.992
rplC	rplT	APH_0280	APH_0060	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.992
rplC	rpmI	APH_0280	APH_0061	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L35; Identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family.	0.987
rplC	rpsA	APH_0280	APH_0273	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575.	0.990
rplC	rpsF	APH_0280	APH_0151	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.991
rplC	rpsG	APH_0280	APH_1034	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.992
rplC	rpsJ	APH_0280	APH_0279	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.998
rplC	rpsL	APH_0280	APH_1035	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.992
rplC	rpsP	APH_0280	APH_0054	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.	0.988