Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
APH_0627RDD family protein; Identified by match to protein family HMM PF06271. (201 aa)    
Predicted Functional Partners:
folB
Dihydroneopterin aldolase; Identified by similarity to SP:P46362; match to protein family HMM PF02152; match to protein family HMM TIGR00526.
       0.580
virB8-1
Type IV secretion protein VirB8-1; Name change from VirB8-2 to VirB8-1. PMID: 20670295.
  
     0.511
ispB
Octaprenyl-diphosphate synthase; Identified by similarity to SP:P19641; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
      
 0.472
APH_1323
Zinc finger-like domain protein; Identified by match to protein family HMM TIGR02098.
  
     0.469
APH_1316
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.457
APH_0110
Acetamidase/formamidase family protein.
  
     0.426
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
       0.426
Your Current Organism:
Anaplasma phagocytophilum
NCBI taxonomy Id: 212042
Other names: A. phagocytophilum str. HZ, Anaplasma phagocytophilum HZ, Anaplasma phagocytophilum str. HZ
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