node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APH_1017 | APH_1148 | APH_1017 | APH_1148 | Outer membrane protein, MSP2 family; Identified by match to protein family HMM PF01617. | Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Belongs to the peptidase S1C family. | 0.406 |
APH_1017 | APH_1209 | APH_1017 | APH_1209 | Outer membrane protein, MSP2 family; Identified by match to protein family HMM PF01617. | Conserved hypothetical protein; Identified by similarity to GB:AAS14739.1. | 0.433 |
APH_1017 | rplY | APH_1017 | APH_1302 | Outer membrane protein, MSP2 family; Identified by match to protein family HMM PF01617. | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.425 |
APH_1017 | rpsD | APH_1017 | APH_0989 | Outer membrane protein, MSP2 family; Identified by match to protein family HMM PF01617. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.406 |
APH_1017 | rpsF | APH_1017 | APH_0151 | Outer membrane protein, MSP2 family; Identified by match to protein family HMM PF01617. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.401 |
APH_1017 | rpsN | APH_1017 | APH_0293 | Outer membrane protein, MSP2 family; Identified by match to protein family HMM PF01617. | Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.408 |
APH_1017 | secA | APH_1017 | APH_1178 | Outer membrane protein, MSP2 family; Identified by match to protein family HMM PF01617. | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.408 |
APH_1148 | APH_1017 | APH_1148 | APH_1017 | Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Belongs to the peptidase S1C family. | Outer membrane protein, MSP2 family; Identified by match to protein family HMM PF01617. | 0.406 |
APH_1148 | rplY | APH_1148 | APH_1302 | Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Belongs to the peptidase S1C family. | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.650 |
APH_1148 | rpsF | APH_1148 | APH_0151 | Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Belongs to the peptidase S1C family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.551 |
APH_1148 | rpsN | APH_1148 | APH_0293 | Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Belongs to the peptidase S1C family. | Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.453 |
APH_1148 | secA | APH_1148 | APH_1178 | Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Belongs to the peptidase S1C family. | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.460 |
APH_1209 | APH_1017 | APH_1209 | APH_1017 | Conserved hypothetical protein; Identified by similarity to GB:AAS14739.1. | Outer membrane protein, MSP2 family; Identified by match to protein family HMM PF01617. | 0.433 |
APH_1209 | rpsF | APH_1209 | APH_0151 | Conserved hypothetical protein; Identified by similarity to GB:AAS14739.1. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.540 |
rplY | APH_1017 | APH_1302 | APH_1017 | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Outer membrane protein, MSP2 family; Identified by match to protein family HMM PF01617. | 0.425 |
rplY | APH_1148 | APH_1302 | APH_1148 | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Belongs to the peptidase S1C family. | 0.650 |
rplY | rpsD | APH_1302 | APH_0989 | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplY | rpsF | APH_1302 | APH_0151 | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplY | rpsN | APH_1302 | APH_0293 | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
rplY | secA | APH_1302 | APH_1178 | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.749 |