| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APH_1040 | atpA | APH_1040 | APH_1334 | Putative cell division protein, degenerate; Likely degenerated ORF. Peptides match to this protein were not detected by global proteomic analysis. | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 0.856 |
| APH_1040 | clpX | APH_1040 | APH_0969 | Putative cell division protein, degenerate; Likely degenerated ORF. Peptides match to this protein were not detected by global proteomic analysis. | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.770 |
| APH_1040 | hflC | APH_1040 | APH_1147 | Putative cell division protein, degenerate; Likely degenerated ORF. Peptides match to this protein were not detected by global proteomic analysis. | HflC protein; HflC and HflK could regulate a protease. | 0.859 |
| APH_1040 | hflK | APH_1040 | APH_1146 | Putative cell division protein, degenerate; Likely degenerated ORF. Peptides match to this protein were not detected by global proteomic analysis. | HflK protein; HflC and HflK could encode or regulate a protease. | 0.920 |
| APH_1040 | rplJ | APH_1040 | APH_1026 | Putative cell division protein, degenerate; Likely degenerated ORF. Peptides match to this protein were not detected by global proteomic analysis. | Ribosomal protein L10; Identified by match to protein family HMM PF00466. | 0.774 |
| APH_1040 | rplM | APH_1040 | APH_1108 | Putative cell division protein, degenerate; Likely degenerated ORF. Peptides match to this protein were not detected by global proteomic analysis. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.777 |
| APH_1040 | rplQ | APH_1040 | APH_0304 | Putative cell division protein, degenerate; Likely degenerated ORF. Peptides match to this protein were not detected by global proteomic analysis. | Ribosomal protein L17; Identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.778 |
| APH_1040 | rpsA | APH_1040 | APH_0273 | Putative cell division protein, degenerate; Likely degenerated ORF. Peptides match to this protein were not detected by global proteomic analysis. | Ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575. | 0.815 |
| APH_1040 | rpsH | APH_1040 | APH_0294 | Putative cell division protein, degenerate; Likely degenerated ORF. Peptides match to this protein were not detected by global proteomic analysis. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.773 |
| APH_1040 | rpsK | APH_1040 | APH_0302 | Putative cell division protein, degenerate; Likely degenerated ORF. Peptides match to this protein were not detected by global proteomic analysis. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.786 |
| atpA | APH_1040 | APH_1334 | APH_1040 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Putative cell division protein, degenerate; Likely degenerated ORF. Peptides match to this protein were not detected by global proteomic analysis. | 0.856 |
| atpA | clpX | APH_1334 | APH_0969 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.703 |
| atpA | hflC | APH_1334 | APH_1147 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | HflC protein; HflC and HflK could regulate a protease. | 0.513 |
| atpA | hflK | APH_1334 | APH_1146 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | HflK protein; HflC and HflK could encode or regulate a protease. | 0.501 |
| atpA | rplJ | APH_1334 | APH_1026 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Ribosomal protein L10; Identified by match to protein family HMM PF00466. | 0.909 |
| atpA | rplM | APH_1334 | APH_1108 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.428 |
| atpA | rplQ | APH_1334 | APH_0304 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Ribosomal protein L17; Identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.895 |
| atpA | rpsA | APH_1334 | APH_0273 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575. | 0.815 |
| atpA | rpsH | APH_1334 | APH_0294 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.918 |
| atpA | rpsK | APH_1334 | APH_0302 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.927 |
