Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APH_1225 | p44-15 | APH_1225 | APH_1226 | Hypothetical protein; Identified by Glimmer2; putative. | P44 gene encodes a full-length P44 outer membrane protein, which can be expressed through recombinatorial gene conversion to p44-18ES expression locus. | 0.463 |
APH_1225 | valS | APH_1225 | APH_1224 | Hypothetical protein; Identified by Glimmer2; putative. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner. | 0.401 |
p44-15 | APH_1225 | APH_1226 | APH_1225 | P44 gene encodes a full-length P44 outer membrane protein, which can be expressed through recombinatorial gene conversion to p44-18ES expression locus. | Hypothetical protein; Identified by Glimmer2; putative. | 0.463 |
valS | APH_1225 | APH_1224 | APH_1225 | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner. | Hypothetical protein; Identified by Glimmer2; putative. | 0.401 |