Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APH_0419 | topA | APH_0419 | APH_0597 | Type IV secretion system protein VirB4, truncated; Identified by similarity to GB:AAM00407.1. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.529 |
| APH_0419 | virB10 | APH_0419 | APH_1404 | Type IV secretion system protein VirB4, truncated; Identified by similarity to GB:AAM00407.1. | Type IV secretion system protein VirB10; Identified by similarity to GB:AAM00418.1; match to protein family HMM PF03743. | 0.967 |
| APH_0419 | virB11 | APH_0419 | APH_1403 | Type IV secretion system protein VirB4, truncated; Identified by similarity to GB:AAM00407.1. | Type IV secretion system protein VirB11; Part of the Type IV secretion system. Belongs to the GSP E family. | 0.823 |
| APH_0419 | virB3 | APH_0419 | APH_0372 | Type IV secretion system protein VirB4, truncated; Identified by similarity to GB:AAM00407.1. | Type IV secretion system protein VirB3; Identified by similarity to GB:AAM00406.1; match to protein family HMM PF05101. | 0.958 |
| APH_0419 | virB8-1 | APH_0419 | APH_1406 | Type IV secretion system protein VirB4, truncated; Identified by similarity to GB:AAM00407.1. | Type IV secretion protein VirB8-1; Name change from VirB8-2 to VirB8-1. PMID: 20670295. | 0.988 |
| APH_0419 | virB9-1 | APH_0419 | APH_1405 | Type IV secretion system protein VirB4, truncated; Identified by similarity to GB:AAM00407.1. | Type IV secretion system protein VirB9 (VirB9-1); Name change from VirB9-2 to VirB9-1. PMID: 20670295. | 0.943 |
| APH_0419 | virB9-2 | APH_0419 | APH_0081 | Type IV secretion system protein VirB4, truncated; Identified by similarity to GB:AAM00407.1. | Type IV secretion system protein VirB9-2; Name change from VirB9-1 to VirB9-2. PMID: 20670295. | 0.962 |
| APH_0419 | virD4 | APH_0419 | APH_1402 | Type IV secretion system protein VirB4, truncated; Identified by similarity to GB:AAM00407.1. | Type IV secretion system protein VirD4; Identified by similarity to GB:AAM00422.1; match to protein family HMM PF02534. | 0.922 |
| topA | APH_0419 | APH_0597 | APH_0419 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | Type IV secretion system protein VirB4, truncated; Identified by similarity to GB:AAM00407.1. | 0.529 |
| topA | virB10 | APH_0597 | APH_1404 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | Type IV secretion system protein VirB10; Identified by similarity to GB:AAM00418.1; match to protein family HMM PF03743. | 0.585 |
| topA | virB11 | APH_0597 | APH_1403 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | Type IV secretion system protein VirB11; Part of the Type IV secretion system. Belongs to the GSP E family. | 0.838 |
| topA | virB4-1 | APH_0597 | APH_0373 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | Type IV secretion system protein VirB4 (VirB4-1); Name change from VirB4-1 to VirB4-2. PMID: 20670295. | 0.529 |
| topA | virB9-2 | APH_0597 | APH_0081 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | Type IV secretion system protein VirB9-2; Name change from VirB9-1 to VirB9-2. PMID: 20670295. | 0.645 |
| topA | virD4 | APH_0597 | APH_1402 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | Type IV secretion system protein VirD4; Identified by similarity to GB:AAM00422.1; match to protein family HMM PF02534. | 0.849 |
| virB10 | APH_0419 | APH_1404 | APH_0419 | Type IV secretion system protein VirB10; Identified by similarity to GB:AAM00418.1; match to protein family HMM PF03743. | Type IV secretion system protein VirB4, truncated; Identified by similarity to GB:AAM00407.1. | 0.967 |
| virB10 | topA | APH_1404 | APH_0597 | Type IV secretion system protein VirB10; Identified by similarity to GB:AAM00418.1; match to protein family HMM PF03743. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.585 |
| virB10 | virB11 | APH_1404 | APH_1403 | Type IV secretion system protein VirB10; Identified by similarity to GB:AAM00418.1; match to protein family HMM PF03743. | Type IV secretion system protein VirB11; Part of the Type IV secretion system. Belongs to the GSP E family. | 0.994 |
| virB10 | virB3 | APH_1404 | APH_0372 | Type IV secretion system protein VirB10; Identified by similarity to GB:AAM00418.1; match to protein family HMM PF03743. | Type IV secretion system protein VirB3; Identified by similarity to GB:AAM00406.1; match to protein family HMM PF05101. | 0.976 |
| virB10 | virB4-1 | APH_1404 | APH_0373 | Type IV secretion system protein VirB10; Identified by similarity to GB:AAM00418.1; match to protein family HMM PF03743. | Type IV secretion system protein VirB4 (VirB4-1); Name change from VirB4-1 to VirB4-2. PMID: 20670295. | 0.981 |
| virB10 | virB4-2 | APH_1404 | APH_1129 | Type IV secretion system protein VirB10; Identified by similarity to GB:AAM00418.1; match to protein family HMM PF03743. | Type IV secretion system protein VirB4-2; Name change from VirB4-1 to VirB4-2. PMID: 20670295. | 0.974 |
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