STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDN30542.1Peptidase S54; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)    
Predicted Functional Partners:
KDN28301.1
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.892
KDN28572.1
General secretion pathway protein GspL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
     0.757
KDN28563.1
General secretion pathway protein GspC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.750
tatA
Preprotein translocase subunit SecA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.747
tatB
Preprotein translocase subunit TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
   
 
 0.747
KDN28574.1
General secretion pathway protein GspN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.747
KDN27213.1
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.741
KDN27298.1
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.725
KDN28573.1
General secretion pathway protein GspM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
     0.698
KDN28570.1
General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.688
Your Current Organism:
Vibrio fortis
NCBI taxonomy Id: 212667
Other names: CAIM 629, LMG 21557, LMG:21557, V. fortis, Vibrio fortis Thompson et al. 2003, Vibrio sp. LMG 21557, Vibrio sp. LMG 21558, Vibrio sp. LMG 21559, Vibrio sp. LMG 21562, strain R-15032
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