Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CTC_00935Transcriptional regulatory protein. (245 aa)    
Predicted Functional Partners:
CTC_00934
Two-component sensor histidine kinase.
 
    0.828
cheA
Chemotaxis protein cheA.
  
 
 0.807
fliM
Flagellar motor switch protein fliM.
  
 
 0.694
fliN
Flagellar motor switch protein fliN.
  
 
 0.573
yesM
Two-component sensor kinase yesM.
 
  
 0.560
CTC_00456
Sensory transduction histidine kinase.
 
 
 0.539
CTC_00716
Sensory component of sensory transduction histidine kinase.
 
 
 
 0.536
CTC_00597
Two-component response regulator.
  
     0.505
CTC_00715
Sensor histidine kinase.
 
 
 0.501
CTC_01804
Sensory transduction protein kinase.
     0.497
Your Current Organism:
Clostridium tetani
NCBI taxonomy Id: 212717
Other names: C. tetani E88, Clostridium tetani E88, Clostridium tetani str. E88
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