Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CTC_00886 | CTC_01153 | CTC_00886 | CTC_01153 | Homoserine dehydrogenase. | O-acetylserine sulfhydrylase. | 0.882 |
CTC_00886 | CTC_01738 | CTC_00886 | CTC_01738 | Homoserine dehydrogenase. | Branched-chain amino acid aminotransferase. | 0.884 |
CTC_00886 | CTC_01806 | CTC_00886 | CTC_01806 | Homoserine dehydrogenase. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.928 |
CTC_00886 | CTC_02355 | CTC_00886 | CTC_02355 | Homoserine dehydrogenase. | Homoserine dehydrogenase. | 0.925 |
CTC_00886 | CTC_02356 | CTC_00886 | CTC_02356 | Homoserine dehydrogenase. | Aspartokinase; Belongs to the aspartokinase family. | 0.715 |
CTC_00886 | CTC_02358 | CTC_00886 | CTC_02358 | Homoserine dehydrogenase. | Threonine synthase. | 0.858 |
CTC_00886 | asd | CTC_00886 | CTC_02293 | Homoserine dehydrogenase. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.958 |
CTC_00886 | dapA | CTC_00886 | CTC_02294 | Homoserine dehydrogenase. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.922 |
CTC_00886 | metAA | CTC_00886 | CTC_01152 | Homoserine dehydrogenase. | Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. | 0.938 |
CTC_00886 | thrB | CTC_00886 | CTC_02357 | Homoserine dehydrogenase. | Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.991 |
CTC_01153 | CTC_00886 | CTC_01153 | CTC_00886 | O-acetylserine sulfhydrylase. | Homoserine dehydrogenase. | 0.882 |
CTC_01153 | CTC_01806 | CTC_01153 | CTC_01806 | O-acetylserine sulfhydrylase. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.967 |
CTC_01153 | CTC_02355 | CTC_01153 | CTC_02355 | O-acetylserine sulfhydrylase. | Homoserine dehydrogenase. | 0.883 |
CTC_01153 | metAA | CTC_01153 | CTC_01152 | O-acetylserine sulfhydrylase. | Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. | 0.996 |
CTC_01153 | thrB | CTC_01153 | CTC_02357 | O-acetylserine sulfhydrylase. | Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.811 |
CTC_01738 | CTC_00886 | CTC_01738 | CTC_00886 | Branched-chain amino acid aminotransferase. | Homoserine dehydrogenase. | 0.884 |
CTC_01738 | CTC_01806 | CTC_01738 | CTC_01806 | Branched-chain amino acid aminotransferase. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.632 |
CTC_01738 | CTC_02355 | CTC_01738 | CTC_02355 | Branched-chain amino acid aminotransferase. | Homoserine dehydrogenase. | 0.884 |
CTC_01738 | asd | CTC_01738 | CTC_02293 | Branched-chain amino acid aminotransferase. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.499 |
CTC_01738 | thrB | CTC_01738 | CTC_02357 | Branched-chain amino acid aminotransferase. | Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.860 |
page 1 of 4