Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CTC_02407Hypothetical protein. (160 aa)    
Predicted Functional Partners:
CTC_02408
Conserved protein.
 
     0.959
CTC_01193
Conserved protein.
  
     0.744
CTC_01827
Putative L-2,4-diaminobutyrate decarboxylase.
  
     0.662
CTC_00749
Putative surface/cell-adhesion protein, multiple big2 domain.
  
     0.512
CTC_01462
Conserved protein.
  
     0.490
CTC_01470
Conserved protein.
  
     0.473
CTC_02406
Hypothetical protein.
       0.430
CTC_01926
Putative transcriptional regulator; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
  
     0.426
CTC_02405
Na+ driven multidrug efflux pump.
       0.415
Your Current Organism:
Clostridium tetani
NCBI taxonomy Id: 212717
Other names: C. tetani E88, Clostridium tetani E88, Clostridium tetani str. E88
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