Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CTC_02449Spore germination protein B2/KB. (359 aa)    
Predicted Functional Partners:
CTC_02447
Spore germination protein B3/KC.
 
  
 0.920
CTC_02448
Spore germination protein KA.
 
  
 0.736
CTC_00416
Conserved protein.
  
     0.632
CTC_01520
Hypothetical protein.
  
     0.632
CTC_02364
Hypothetical protein.
  
     0.632
CTC_00543
Hypothetical protein.
  
     0.601
CTC_01971
Hypothetical protein.
  
     0.551
CTC_02514
Membrane associated protein.
  
     0.549
CTC_00544
Conserved protein.
  
     0.499
CTC_01832
Hypothetical protein.
  
     0.486
Your Current Organism:
Clostridium tetani
NCBI taxonomy Id: 212717
Other names: C. tetani E88, Clostridium tetani E88, Clostridium tetani str. E88
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