Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CTC_02487Nitrite transporter. (256 aa)    
Predicted Functional Partners:
CTC_02486
Anaerobic sulfite reductase subunit A.
 
   
 0.818
CTC_02484
Anaerobic sulfite reductase subunit C; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
     0.814
CTC_02485
Anaerobic sulfite reductase subunit B.
     
 0.765
CTC_02488
Transcription regulator, crp family.
  
    0.611
CTC_02489
Pyruvate kinase; Belongs to the pyruvate kinase family.
       0.550
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
  
    0.536
CTC_00728
Uroporphyrinogen III synthase/methyltransferase.
     
 0.510
CTC_01159
Pyruvate-flavodoxin oxidoreductase.
     
 0.412
CTC_01741
Pyruvate-flavodoxin oxidoreductase.
     
 0.412
Your Current Organism:
Clostridium tetani
NCBI taxonomy Id: 212717
Other names: C. tetani E88, Clostridium tetani E88, Clostridium tetani str. E88
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