STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB20714.1Hypothetical protein. (163 aa)    
Predicted Functional Partners:
AGB20713.1
Hypothetical protein.
     
 0.613
AGB20712.1
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
       0.580
AGB20489.1
PFAM: Protein phosphatase 2C.
  
 
 0.484
AGB25245.1
PFAM: Protein phosphatase 2C.
  
 
 0.483
AGB21358.1
Capsular exopolysaccharide biosynthesis protein; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family.
   
 
 0.459
AGB21768.1
Capsular polysaccharide biosynthesis protein; PFAM: Chain length determinant protein.
   
 
 0.459
AGB21770.1
Capsular polysaccharide biosynthesis protein; PFAM: Chain length determinant protein.
   
 
 0.459
AGB24438.1
Serine phosphatase RsbU, regulator of sigma subunit; PFAM: GAF domain; Stage II sporulation protein E (SpoIIE).
  
 
 0.440
AGB26493.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Stage II sporulation protein E (SpoIIE); Phosphoserine phosphatase RsbU, N-terminal domain; PAS fold; TIGRFAM: PAS domain S-box.
  
 
 0.440
AGB20710.1
Arabinose efflux permease family protein; PFAM: Sugar (and other) transporter.
     
 0.433
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.