Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB20719.1Hypothetical protein. (137 aa)    
Predicted Functional Partners:
AGB24438.1
Serine phosphatase RsbU, regulator of sigma subunit; PFAM: GAF domain; Stage II sporulation protein E (SpoIIE).
  
 
 0.956
AGB26493.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Stage II sporulation protein E (SpoIIE); Phosphoserine phosphatase RsbU, N-terminal domain; PAS fold; TIGRFAM: PAS domain S-box.
  
 
 0.956
AGB21383.1
ABC-type transport system involved in resistance to organic solvents, ATPase component; PFAM: ABC transporter.
   
 0.635
AGB21736.1
Hypothetical protein.
  
 
 0.628
AGB26491.1
Anti-sigma regulatory factor (Ser/Thr protein kinase); PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.628
AGB25506.1
STAS domain-containing protein; PFAM: STAS domain.
  
 
 0.627
AGB26529.1
Anti-sigma regulatory factor (Ser/Thr protein kinase); Manually curated.
  
 
 0.627
AGB23302.1
PAS domain S-box; PFAM: Stage II sporulation protein E (SpoIIE); PAS fold; TIGRFAM: PAS domain S-box.
  
 
 0.618
AGB26492.1
PFAM: Stage II sporulation protein E (SpoIIE).
  
 
 0.614
AGB26532.1
PFAM: Response regulator receiver domain; Stage II sporulation protein E (SpoIIE).
  
 
 0.613
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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