node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGB20935.1 | AGB21655.1 | Mycsm_00484 | Mycsm_01236 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Hypothetical protein. | 0.627 |
AGB20935.1 | AGB21861.1 | Mycsm_00484 | Mycsm_01450 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; HRDC domain. | 0.669 |
AGB20935.1 | AGB24157.1 | Mycsm_00484 | Mycsm_03893 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | PFAM: Exonuclease; GIY-YIG catalytic domain; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family. | 0.675 |
AGB20935.1 | AGB25490.1 | Mycsm_00484 | Mycsm_05292 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | PFAM: UvrD/REP helicase; TIGRFAM: ATP-dependent DNA helicase PcrA. | 0.709 |
AGB20935.1 | mfd | Mycsm_00484 | Mycsm_05160 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Transcription-repair coupling factor Mfd; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.739 |
AGB20935.1 | recA | Mycsm_00484 | Mycsm_02556 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.663 |
AGB20935.1 | ruvB | Mycsm_00484 | Mycsm_02721 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.705 |
AGB20935.1 | uvrA | Mycsm_00484 | Mycsm_03058 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.909 |
AGB20935.1 | uvrB | Mycsm_00484 | Mycsm_03042 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.992 |
AGB20935.1 | uvrC | Mycsm_00484 | Mycsm_02854 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.955 |
AGB21655.1 | AGB20935.1 | Mycsm_01236 | Mycsm_00484 | Hypothetical protein. | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | 0.627 |
AGB21655.1 | AGB21861.1 | Mycsm_01236 | Mycsm_01450 | Hypothetical protein. | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; HRDC domain. | 0.578 |
AGB21655.1 | AGB24157.1 | Mycsm_01236 | Mycsm_03893 | Hypothetical protein. | PFAM: Exonuclease; GIY-YIG catalytic domain; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family. | 0.465 |
AGB21655.1 | AGB25490.1 | Mycsm_01236 | Mycsm_05292 | Hypothetical protein. | PFAM: UvrD/REP helicase; TIGRFAM: ATP-dependent DNA helicase PcrA. | 0.456 |
AGB21655.1 | uvrA | Mycsm_01236 | Mycsm_03058 | Hypothetical protein. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.627 |
AGB21655.1 | uvrB | Mycsm_01236 | Mycsm_03042 | Hypothetical protein. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.902 |
AGB21861.1 | AGB20935.1 | Mycsm_01450 | Mycsm_00484 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; HRDC domain. | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | 0.669 |
AGB21861.1 | AGB21655.1 | Mycsm_01450 | Mycsm_01236 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; HRDC domain. | Hypothetical protein. | 0.578 |
AGB21861.1 | AGB24157.1 | Mycsm_01450 | Mycsm_03893 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; HRDC domain. | PFAM: Exonuclease; GIY-YIG catalytic domain; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family. | 0.920 |
AGB21861.1 | AGB25490.1 | Mycsm_01450 | Mycsm_05292 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; HRDC domain. | PFAM: UvrD/REP helicase; TIGRFAM: ATP-dependent DNA helicase PcrA. | 0.977 |