Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB20999.1Hypothetical protein; PFAM: YCII-related domain. (108 aa)    
Predicted Functional Partners:
AGB21000.1
Hypothetical protein.
       0.773
AGB21001.1
Exopolyphosphatase; PFAM: Ppx/GppA phosphatase family.
       0.569
AGB21771.1
Hypothetical protein.
  
     0.485
AGB21078.1
Hypothetical protein.
  
     0.479
AGB21002.1
Hypothetical protein.
       0.440
AGB21003.1
Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel.
       0.420
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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