Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB21025.1Hypothetical protein. (168 aa)    
Predicted Functional Partners:
AGB21026.1
PFAM: Cytochrome P450.
  
    0.782
AGB24297.1
Hypothetical protein.
 
     0.646
AGB21024.1
PFAM: Protein of unknown function (DUF3024); manually curated.
       0.572
AGB21027.1
PFAM: Domain of unknown function (DUF385).
 
     0.519
AGB23023.1
PFAM: Protein of unknown function (DUF1469).
 
    0.486
AGB22491.1
PFAM: Bacterial regulatory proteins, tetR family.
  
    0.474
AGB23110.1
Putative membrane protein; PFAM: Transglycosylase associated protein.
 
  
 0.473
AGB23711.1
PFAM: Protein of unknown function (DUF2867).
  
     0.469
AGB22179.1
PFAM: Bacterial regulatory proteins, tetR family.
  
    0.461
AGB21892.1
Hypothetical protein.
  
     0.446
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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