Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB21212.1Transcriptional regulator; PFAM: Tetracyclin repressor, C-terminal all-alpha domain; Bacterial regulatory proteins, tetR family. (263 aa)    
Predicted Functional Partners:
AGB22446.1
PFAM: EAL domain; GGDEF domain; GAF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
  
 0.568
AGB21213.1
Hypothetical protein.
     
 0.523
AGB22448.1
Hypothetical protein.
  
  
 0.506
AGB23277.1
Transcriptional regulator; PFAM: Tetracyclin repressor, C-terminal all-alpha domain; Bacterial regulatory proteins, tetR family.
  
     0.476
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.426
AGB21996.1
Hypothetical protein.
  
     0.410
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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