Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB21236.1PFAM: NHL repeat. (293 aa)    
Predicted Functional Partners:
AGB26353.1
PFAM: GLTT repeat (6 copies).
 
 0.707
AGB21238.1
Hypothetical protein.
  
 
 0.646
AGB21767.1
Beta-galactosidase; PFAM: Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.530
AGB20982.1
PFAM: Protein of unknown function (DUF2599).
  
 0.527
AGB23018.1
Hypothetical protein.
  
 0.527
AGB25644.1
PFAM: Protein of unknown function (DUF3071).
  
 0.527
AGB26343.1
PFAM: Cutinase.
  
 0.527
AGB25698.1
Polyketide synthase family protein; PFAM: Phosphopantetheine attachment site; Acyl transferase domain; KR domain; Alcohol dehydrogenase GroES-like domain; Beta-ketoacyl synthase, N-terminal domain; Condensation domain; Beta-ketoacyl synthase, C-terminal domain; Zinc-binding dehydrogenase.
 
 
 0.520
AGB26341.1
Beta-ketoacyl synthase family protein; PFAM: Phosphopantetheine attachment site; Thioesterase domain; Acyl transferase domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain.
 
 
 0.484
AGB26046.1
Polyketide synthase family protein; PFAM: Phosphopantetheine attachment site; Acyl transferase domain; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain.
 
 
 0.475
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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