Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AGB21282.1PFAM: Probable cobalt transporter subunit (CbtA). (272 aa)    
Predicted Functional Partners:
AGB21281.1
Hypothetical protein.
 
     0.949
AGB21280.1
PFAM: Nitrile hydratase beta subunit; TIGRFAM: nitrile hydratase accessory protein.
 
     0.813
AGB22399.1
PFAM: Probable cobalt transporter subunit (CbtB); TIGRFAM: cobalt transporter subunit CbtB (proposed).
 
     0.786
AGB26076.1
Hypothetical protein.
 
     0.786
AGB21278.1
PFAM: Nitrile hydratase beta subunit; TIGRFAM: nitrile hydratase, beta subunit.
       0.771
AGB21279.1
PFAM: Nitrile hydratase, alpha chain; TIGRFAM: nitrile hydratase, alpha subunit.
       0.771
AGB21277.1
PFAM: Protein of unknown function (DUF1097).
       0.762
AGB26074.1
Fructose-2,6-bisphosphatase; PFAM: Phosphoglycerate mutase family.
 
     0.540
AGB21276.1
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: DJ-1/PfpI family; Bacterial regulatory helix-turn-helix proteins, AraC family; manually curated.
       0.514
AGB22402.1
Putative GTPase, G3E family; PFAM: CobW/HypB/UreG, nucleotide-binding domain; Cobalamin synthesis protein cobW C-terminal domain.
  
    0.441
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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