Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB21363.1PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (405 aa)    
Predicted Functional Partners:
AGB21364.1
Hypothetical protein; PFAM: YCII-related domain.
 
  
 0.954
AGB23255.1
Hypothetical protein; PFAM: YCII-related domain.
 
  
 0.801
AGB21116.1
Hypothetical protein; PFAM: YCII-related domain.
 
  
 0.784
AGB26555.1
Hypothetical protein; PFAM: YCII-related domain.
 
  
 0.635
AGB21365.1
PE-PPE domain-containing protein; PFAM: PE-PPE domain.
       0.521
AGB21362.1
Hypothetical protein.
       0.450
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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