Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB21377.1Alpha-mannosidase; PFAM: Glycosyl hydrolases family 38 C-terminal domain; NPCBM-associated, NEW3 domain of alpha-galactosidase; Glycosyl hydrolases family 38 N-terminal domain; Alpha mannosidase, middle domain. (1398 aa)    
Predicted Functional Partners:
AGB20502.1
PTS system D-fructose-specific IIABC component (F1P-forming), Frc family; PFAM: Phosphotransferase system, EIIC; PTS system, Lactose/Cellobiose specific IIB subunit; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; TIGRFAM: PTS system, fructose-specific, IIB component; PTS system, fructose subfamily, IIC component; PTS system, fructose subfamily, IIA component; TC 4.A.2.1.4.
  
 
 0.979
AGB21378.1
Hypothetical protein.
  
    0.943
AGB21379.1
Transcriptional regulator/sugar kinase; PFAM: ROK family.
 
  
 0.919
apeB
PFAM: Aminopeptidase I zinc metalloprotease (M18).
   
 0.838
AGB21376.1
Metal-dependent hydrolase; PFAM: Endonuclease/Exonuclease/phosphatase family.
  
  
 0.779
AGB21375.1
Hypothetical protein.
       0.679
AGB21925.1
PFAM: Glycerate kinase family; TIGRFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family.
    
 0.659
AGB24171.1
PFAM: Glycerate kinase family; TIGRFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family.
    
 0.659
AGB24308.1
Hypothetical protein.
  
     0.593
AGB23373.1
Putative membrane protein.
  
     0.549
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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