Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB21619.1PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (305 aa)    
Predicted Functional Partners:
AGB21737.1
PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; manually curated.
    
 0.778
AGB21477.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
   
  
 0.724
AGB22828.1
Mn-dependent transcriptional regulator; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain.
  
  
 0.721
AGB21465.1
Putative ATPase; PFAM: Adenylate and Guanylate cyclase catalytic domain; Bacterial regulatory proteins, luxR family.
  
  
 0.716
AGB22508.1
Putative transcriptional regulator; PFAM: HxlR-like helix-turn-helix.
   
    0.706
AGB26510.1
PFAM: ATPase family associated with various cellular activities (AAA).
  
  
 0.696
AGB26328.1
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
  
 0.670
AGB21392.1
Phenylacetic acid-responsive transcriptional repressor; PFAM: PaaX-like protein C-terminal domain; PaaX-like protein.
   
    0.664
AGB21416.1
PFAM: Bacterial regulatory proteins, tetR family; TIGRFAM: mycofactocin system transcriptional regulator.
   
  
 0.663
AGB25363.1
PFAM: Bacterial regulatory proteins, tetR family.
  
  
 0.639
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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