Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGB20935.1 | AGB21655.1 | Mycsm_00484 | Mycsm_01236 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Hypothetical protein. | 0.627 |
AGB20935.1 | AGB21855.1 | Mycsm_00484 | Mycsm_01444 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | DNA/RNA helicase, superfamily I; PFAM: Protein of unknown function (DUF2800); UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. | 0.434 |
AGB20935.1 | AGB21856.1 | Mycsm_00484 | Mycsm_01445 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. | 0.434 |
AGB20935.1 | AGB21861.1 | Mycsm_00484 | Mycsm_01450 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; HRDC domain. | 0.669 |
AGB20935.1 | uvrA | Mycsm_00484 | Mycsm_03058 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.909 |
AGB20935.1 | uvrB | Mycsm_00484 | Mycsm_03042 | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.992 |
AGB21655.1 | AGB20935.1 | Mycsm_01236 | Mycsm_00484 | Hypothetical protein. | Excinuclease ATPase subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit. | 0.627 |
AGB21655.1 | AGB21656.1 | Mycsm_01236 | Mycsm_01237 | Hypothetical protein. | PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit. | 0.645 |
AGB21655.1 | AGB21657.1 | Mycsm_01236 | Mycsm_01238 | Hypothetical protein. | PFAM: Type I restriction modification DNA specificity domain. | 0.644 |
AGB21655.1 | AGB21658.1 | Mycsm_01236 | Mycsm_01239 | Hypothetical protein. | Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase; HsdM N-terminal domain. | 0.644 |
AGB21655.1 | AGB21855.1 | Mycsm_01236 | Mycsm_01444 | Hypothetical protein. | DNA/RNA helicase, superfamily I; PFAM: Protein of unknown function (DUF2800); UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. | 0.581 |
AGB21655.1 | AGB21856.1 | Mycsm_01236 | Mycsm_01445 | Hypothetical protein. | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. | 0.581 |
AGB21655.1 | AGB21861.1 | Mycsm_01236 | Mycsm_01450 | Hypothetical protein. | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; HRDC domain. | 0.578 |
AGB21655.1 | AGB23805.1 | Mycsm_01236 | Mycsm_03511 | Hypothetical protein. | Excinuclease ATPase subunit; PFAM: ABC transporter. | 0.627 |
AGB21655.1 | uvrA | Mycsm_01236 | Mycsm_03058 | Hypothetical protein. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.627 |
AGB21655.1 | uvrB | Mycsm_01236 | Mycsm_03042 | Hypothetical protein. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.902 |
AGB21656.1 | AGB21655.1 | Mycsm_01237 | Mycsm_01236 | PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit. | Hypothetical protein. | 0.645 |
AGB21656.1 | AGB21657.1 | Mycsm_01237 | Mycsm_01238 | PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit. | PFAM: Type I restriction modification DNA specificity domain. | 0.981 |
AGB21656.1 | AGB21658.1 | Mycsm_01237 | Mycsm_01239 | PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit. | Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase; HsdM N-terminal domain. | 0.991 |
AGB21657.1 | AGB21655.1 | Mycsm_01238 | Mycsm_01236 | PFAM: Type I restriction modification DNA specificity domain. | Hypothetical protein. | 0.644 |
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