Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB21848.1PFAM: Protein of unknown function (DUF3107). (85 aa)    
Predicted Functional Partners:
AGB24160.1
Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c.
  
     0.738
AGB24161.1
Rieske Fe-S protein; PFAM: Rieske [2Fe-2S] domain.
  
     0.677
AGB24165.1
Cytochrome c oxidase subunit IV; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.669
AGB24162.1
Cytochrome b subunit of the bc complex.
  
     0.618
AGB24135.1
PFAM: Protein of unknown function (DUF3040).
  
     0.595
AGB21847.1
Hypothetical protein.
       0.582
AGB22938.1
PFAM: Protein of unknown function (DUF3093); manually curated.
  
     0.573
AGB24008.1
Putative transcriptional regulator; Manually curated.
  
     0.551
AGB24150.1
PFAM: Polyketide cyclase / dehydrase and lipid transport.
  
   
 0.529
AGB21032.1
ResB protein required for cytochrome c biosynthesis; PFAM: ResB-like family.
  
     0.467
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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